Sallinen, S., Norberg, A., Susi, H. & Laine, A.-L. 2020. Intraspecific host variation plays a key role in virus community assembly. Nature Communications, 11,5610 (2020). doi: 10.1038/s41467-020-19273-z

Kaarlejärvi, E., Salemaa, M., Tonteri, T., Merilä, P. & Laine, A.-L. 2020. Turnover in boreal forest understory following disturbance varies along a fertility gradient. Global Ecology and Biogeography. Accepted.

Halliday. F. W., Penczykowski, R., Barres, B., Eck, J., Numminen, E. & Laine, A.-L. 2020. Facilitative priority effects drive parasite assembly under coinfection. Nature Ecology & Evolution 4: 1510–152. doi: 10.1038/s41559-020-01289-9

Halliday, F. W., Rohr, J. R. & Laine, A.-L. 2020. Biodiversity loss underlies the dilution effect of biodiversity. Ecology Letters, 23:1611-1622. doi: 10.1111/ele.13590

Opedal, Ø., Ovaskainen, O. Saastamoinen, M., Laine, A.-L. & van Nouhuys, S. 2020. Host plant availability drives the spatio-temporal dynamics of interacting metapopulations across a fragmented landscape. Ecology, 00( 00):e03186. doi: 10.1002/ecy.3186 

Numminen, E. & Laine, A.-L. 2020. The spread of a wild plant pathogen is driven by the road network. PLoS Computational Biology, 16(3). doi: 10.1371/journal.pcbi.100770.

Smith, A. L., Hodkinson, T. R., Villellas, J., Catford, J. A., Csergő, A. M., Blomberg, S. P., Crone, E., E., Ehrlén, J., Garcia, M. B., Laine, A.-L., Roach, D. B., Salguero-Gómez, R., Wardle, G. M., Childs, D. Z., Elderd, B. D., Finn, A., Munné-Bosch, S., Baudraz, M. E. A., Bódis, J., Brearley, F. Q., Bucharova, A., Caruso, C. M., Duncan, R. P., Dwyer, J. M., Gooden, B., Groenteman, R., Hamre, L. N., Helm, A., Kelly, R., Laanisto, L., Lonati, L., Moore, J. L., Morales, M., Olsen, S. L., Pärtel, M., Petry, W. K., Ramula, S., Rasmussen, P. U., Enri, S. R., Roeder, A., Roscher, C., Saastamoinen, M., Tack, A. J. M., Töpper, J. P., Vose, G. E., Wandrag, E. M., Wingler, A. and Buckley, Y. M. 2020.  Global gene flow releases invasive plants from environmental constraints on genetic diversity. Proceedings of The National Academy of Sciences, 117 (8) 4218-4227. doi: 10.1073/pnas.1915848117


Laine, A.-L., Barrès, B., Numminen, E. & Sirén, J. 2019. Variable opportunities for outcrossing result in hotspots of novel genetic variation in a pathogen metapopulation. eLife, 8:e47091. doi:10.7554/eLife.47091

Dallas, T., Laine, A.-L. & Ovaskainen, O. 2019. Detecting parasite associations within multispecies host and parasite communities. Proc R Soc B, 286:1912. doi:10.1098/rspb.2019.1109

Numminen, E., Vaumourin, E., Parratt, S., Poulin, L., & Laine, A.-L. 2019. Variation and correlations between sexual, asexual and natural enemy resistance life-history traits in a naturalplant pathogen population. BMC Evolutionary Biology, 19: 142. doi:10.1186/s12862-019-1468-2

Karvonen, A., Jokela, J. & Laine, A-L., 2019. The importance of sequence and timing of parasite coinfections. Trends in Parasitology, 35: 109-118. doi: 10.1016/

Susi, H. S., Filloux, D., Frilander, M. J., Roumagnac, P. & Laine, A-L. 2019. Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. PeerJ. 7(24): 6140. doi: 10.7717/peerj.6140

Penczykowski, R. M., Parratt, S. R., Barres, B., Sallinen, S. K. & Laine, A-L. 2018. Manipulating host resistance structure reveals impact of pathogen dispersal and environmental heterogeneity on epidemics. Ecology. 99: 2853-2863. doi: 10.1002/ecy.2526

Laine, A-L. & Mäkinen, H. 2018. Life-history correlations change under coinfection leading to higher pathogen load. Evolution Letters. 2: 126-133. doi: 10.1002/evl3.48

Parratt, S. R. & Laine, A-L. 2018. Pathogen dynamics under both bottom-up host resistance and top-down hyperparasite attack. Journal of Applied Ecology. 55: 2976-2985. doi: 10.1111/1365-2664.13185

Vaumourin, E. & Laine, A-L. 2018. Role of Temperature and Coinfection in Mediating Pathogen Life-History Traits. Frontiers in Plant Science. 9: 1670. doi: 10.3389/fpls.2018.01670

Höckerstedt, L. M., Siren, J. P. & Laine, A-L. 20018. Effect of spatial connectivity on host resistance in a highly fragmented natural pathosystem. Journal of Evolutionary Biology. 31: 844-852. doi: 10.1111/jeb.13268.

Susi, H. & Laine, A.-L. 2017. Host resistance and pathogen aggressiveness are key determinants of coinfection in the wild. Evolution, 71:2110–2119. doi: 10.1111/evo.13290

Giraud, T., Koskella, B. & Laine, A.-L. 2017. Microbial local adaptation: insights from natural populations, genomics and experimental evolution. Molecular Ecology 26: 1703-1710. doi:10.1111/mec.14091

Susi H., Laine A.-L., Filloux D., Kraberger S., Farkas K., Bernardo P., Frilander M.J., Martin D.P., Varsani A., Roumagnac P. 2017. Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland. Arch Virol, 162:2041. doi:10.1007/s00705-017-3298-0

Soubeyrand, S. & Laine, A.-L. 2017. When group dispersal and Allee effect shape metapopulation dynamics. Annales Zoologici Fennici, 54:123-138. doi:10.5735/086.054.0112

Parratt, S. R., Barres, B., Penczykowski, R. M. & Laine, A.-L. 2017. Local adaptation at higher trophic levels: contrasting hyperparasite–pathogen infection dynamics in the field and laboratory. Molecular Ecology, 26: 1964–1979. doi:10.1111/mec.13928

Hiltunen, T. Virta, M. & Laine, A.-L. 2017. Antibiotic resistance in the wild: an eco-evolutionary perspective. Philosophical Transactions of the Royal Society. Biological Sciences. 372:1712 doi:10.1098/rstb.2016.0039

Laine, A.-L. 2016. Disease resistance: Not so costly after all. Nature Plants 2:16121. doi:10.1038/nplants.2016.121

Croll, D. & Laine, A.-L. 2016. What the population genetic structures of host and pathogen tell us about disease evolution. New Phytologist, 212:537-539. doi:10.1111/nph.14203

Borer, E., Laine, A.-L. & Seabloom, E. 2016. A Multiscale Approach to Plant Disease Using the Metacommunity Concept. Annual Review of Phytopathology 54: 397-418. doi:10.1146/annurev-phyto-080615-095959

Laine, A.-L. 2016. Ilkka Hanski: Population ecologist who modeled how species cope with habitat loss. Nature 534:180 doi:10.1038/534180a

Parratt, S.R., Numminen, E. & Laine, A.-L. 2016. Infectious Disease Dynamics in Heterogeneous Landscapes. Annual Review of Ecology, Evolution and Systematics. 47:283–306. doi:10.1146/annurev-ecolsys-121415-032321

Parratt, S. R. and Laine, A-L 2016. The role of hyperparasitism in microbial pathogen ecology and evolution. The ISME Journal 10.1038/ismej.2015.247. doi: 10.1038/ismej.2015.247

Tollenaere, C., Susi, H. & Laine, A.-L. 2016. Evolutionary and epidemiological implications of multiple infections in plants. TRENDS in Plant Science, 21: 80-90 doi: 10.1016/j.tplants.2015.10.014

Penczykowski, R., Laine, A.-L. & Koskella, B. 2016. Understanding the ecology and evolution of host–parasite interactions across scales, Evolutionary Applications, 9: 37-52. doi: 10.1111/eva.12294

Susi, H., Barrès, B., Vale, P. & Laine, A.-L. 2015. Coinfection alters population dynamics of infectious disease. Nature Communications, 6: 5975. doi: 10.1038/ncomms6975

Susi, H., Vale, P. & Laine, A.-L. 2015. Host genotype and coinfection modify the relationship of within and between host transmission. American Naturalist, 186: 252-263. doi: 10.1086/682069

Tack, A. J. M., Laine, A.-L., Burdon, J. J. Bissett, A. & Thrall, P. H. 2015. Belowground abiotic and biotic heterogeneity shapes aboveground infection outcomes and spatial divergence in a host-parasite interaction. New Phytologist, 207: 1159-1169. doi: 10.1111/nph.13408

Susi, H. & Laine, A.-L. 2015. The effectiveness and costs of pathogen resistance strategies in a perennial plant. Journal of Ecology, 103:303-315. doi: 10.1111/1365-2745.12373

Penczykowski, R., Walker, E., Soubeyrand, S. & Laine, A.-L. 2015. Linking winter conditions to large-scale disease dynamics in a wild plant-pathogen metapopulation. New Phytologist, 205:1142-1152. doi: 10.1111/nph.13145

Tollenaere, C., Pernechele, B., Mäkinen, H., Parratt, S., Nemeth, M., Kovacs, G., Levente, K. Tack, A. & Laine, A.-L. 2014. A hyperparasite affects the population dynamics of a wild plant pathogen. Molecular Ecology, 23: 5877-5878. doi: 10.1111/mec.12908

Jousimo, J, Tack, AJM, Ovaskainen, O., Mononen, T., Susi, H., Tollenaere, C. & Laine, A.-L. 2014. Ecological and evolutionary effects of fragmentation on infectious disease dynamics. Science, 344: 1289-1293. doi: 10.1126/science.1253621

Laine, A.-L., Burdon et al. 2014. Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation. Proceedings of the Royal Society B, 281: 20140522. doi: 10.1098/rspb.2014.0522

Soubeyrand, S. Tollenaere, C., Haon-Lasportes, E. & Laine, A.-L. 2014. Regression-based ranking of pathogen strains with respect to their contribution to natural epidemics. PLoS ONE 9(1): e86591. doi: 10.1371/journal.pone.0086591

Tack, A. J. M. & Laine, A.-L. 2014. Ecological and evolutionary implications of spatial heterogeneity during the off-season for a wild plant pathogen. New Phytologist 202: 297-308. doi: 10.1111/nph.12646

Tack, A. J. M., Horns, F. & Laine, A.-L. 2014. The impact of spatial scale and habitat configuration on patterns of trait variation and local adaptation in a wild plant parasite. Evolution, 68:176-189. DOI: 10.1111/evo.12239

Tack, A. J. M. & Laine, A.-L. 2014. Spatial eco-evolutionary feedback in wild plant-pathogen interactions. European Journal of Plant Pathology, 138: 667-677. doi: 10.1007/s10658-013-0353-x

Susi, H. & Laine, A.-L. 2013. Pathogen life-history correlations change in allopatry. Evolution 67: 3362-3370. doi: 10.1111/evo.12182

Laine, A.-L. & Barrès, B. 2013. Epidemiological and evolutionary consequences of virulence costs. Plant Pathology 62: S96-105. doi: 10.1111/ppa.12129

Tack, A. J. M., Hakala, J., Petäjä, T., Kulmala, M. & Laine, A.-L. 2013. Genotype and spatial structure shape pathogen dispersal and disease dynamics at small spatial scales. Ecology 95:703-714. doi: 10.1890/13-0518.1

Harrison, E. Laine, A.-L., Hietala, M. & Brockhurst, M. 2013. Rapidly fluctuating environments constrain co-evolutionary arms races by impeding selective sweeps. Proceeding of the Royal Society B, 280: 20130937. doi: 10.1098/rspb.2013.0937

Tollenaere, C. & Laine, A.-L. 2013. Investigating the production of sexual resting structures in a plant pathogen reveals unexpected self-fertility and genotype-by-environment effects. Journal of Evolutionary Biology, 26: 1716-1726. doi: 10.1111/jeb.12169

Tollenaere, C. Susi, H., Nokso-Koivisto, J., Koskinen, P. Tack, A. J. M., Auvinen, P. Paulin, L., Frilander, M. J., Lehtonen, R. & Laine, A.-L. 2012. SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection. PLoS ONE 7: e52492. doi: 10.1371/journal.pone.0052492

Tack, A., Thrall, P. H. Barrett, L. G., Burdon, J. J. & Laine, A.-L. 2012. Variation in infectivity and aggressiveness in space and time in wild host-pathogen systems- causes and consequences. Journal of Evolutionary Biology 25:1918-1936. doi: 10.1111/j.1420-9101.2012.02588.x

Nemri, A., Barrett, L. G., Laine, A.-L., Burdon, J. J., & Thrall, P. H. 2012. Population Processes at Multiple Spatial Scales Maintain Diversity and Adaptation in the Linum marginale Melampsora lini Association. PLoS ONE 7: e41366. doi: 10.1371/journal.pone.0041366

Thrall, P. H., Laine, A.-L., Ravensdale, M. Nemri, A. Dodds, P. N. & Burdon, J. J. 2012. Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecology Letters, 15: 425-35. doi: 10.1111/j.1461-0248.2012.01749.x

Laine, A.-L. 2011. Context dependent effects of induced resistance in mediating subsequent infections in a plant-pathogen interaction. Evolutionary Applications, 4: 696–707. doi: 10.1111/j.1752-4571.2011.00194.x

Laine, A.-L., Burdon, J. J., Dodds, P. N. & Thrall, P. H. 2011. Spatial variation in disease resistance: from molecules to metapopulations. Journal of Ecology, 99: 96-112. doi: 10.1111/j.1365-2745.2010.01738.x

Antonovics, J. Thrall, P.H., Burdon, J. J. & Laine, A.-L. 2011. Partial resistance in the Linum-Melampsora host-pathogen system: does partial resistance make the Red Queen run slower? Evolution, 65: 512-522. doi: 10.1111/j.1558-5646.2010.01146.x

North, A., Pennanen, J., Ovaskainen, O., & Laine, A.-L. 2011. Local adaptation in a changing world: the roles of gene flow, mutation, and sexual reproduction. Evolution, 65: 79-89. doi: 10.1111/j.1558-5646.2010.01107.x

Thrall, P. H., Laine, A.-L.,Broadhurst, L. M.,  Bagnall, D. J., Brockwell, J. 2011 .Symbiotic Effectiveness of Rhizobial Mutualists Varies in Interactions with Native Australian Legume Genera. PLoS ONE 6: e23545.doi: 10.1371/journal.pone.0023545

Thompson, J. N., Laine, A.-L., & Thompson, J. F. 2010. Retention of mutualism in a geographically diverging interaction. Ecology Letters, 13:1368-1377. doi: 10.1111/j.1461-0248.2010.01529.x

Georgescu, V., Kretzschemmar, A., Soubeyrand, S. & Laine, A.-L. 2009. Exploring spatial and multitype assemblages of species abundances. Biometrical Journal, 51: 979-995. doi: 10.1002/bimj.200900055

Laine, A.-L. 2009. Role of coevolution in generating biological diversity – spatially divergent selection trajectories. Journal of Experimental Botany 60: 2957-2970. doi: 10.1093/jxb/erp168

Soubeyrand, S., Laine, A.-L., Hanski, I. & Penttinen, A. 2009. Spatio-temporal structure of host-pathogen interactions in a metapopulation. American Naturalist, 174:308-320. doi: 10.1086/603624

Laine, A.-L. 2008. Temperature-mediated patterns of local adaptation in a natural plant-pathogen metapopulation. Ecology Letters 11:327-337. doi: 10.1111/j.1461-0248.2007.01146.x

Van Nouhuys, S. & Laine, A.-L. 2008. Population dynamics and sex ratio of a parasitoid altered by fungal infected diet of host butterfly. Proceedings of the Royal Society B 275: 787-795. doi: 10.1098/rspb.2007.1588

Laine, A.-L. & Tellier, A. 2008. Heterogeneous selection promotes polymorphism maintenance in host-parasite interactions. Oikos 117:1281-1288. doi: 10.1111/j.0030-1299.2008.16563.x

Laine, A.-L. 2007. Pathogen fitness components and genotypes differ in their sensitivity to nutrient and temperature variation in a wild plant-pathogen association. Journal of Evolutionary Biology 20: 2371-2378. doi: 10.1111/j.1420-9101.2007.01406.x

Roslin, T. Laine, A.-L. & Gripenberg, S. 2007. Spatial population structure in an obligate plant pathogen colonizing oak (Quercus robur). Functional Ecology 21:1168-1177. doi: 10.1111/j.1365-2435.2007.01315.x

Laine, A.-L. 2007. Detecting local adaptation in a natural plant-pathogen metapopulation – a laboratory vs. field transplant approach. Journal of Evolutionary Biology 20: 1665-1673. doi: 10.1111/j.1420-9101.2007.01359.x

Laine, A.-L. 2006. Evolution of host resistance: looking for coevolutionary hotspots at small spatial scales. Proceedings of the Royal Society B 273:267-273. doi: 10.1098/rspb.2005.3303

Ovaskainen, O. & Laine, A.-L. 2006. Inferring evolutionary signals from ecological data in a plant-pathogen metapopulation. Ecology 87: 880-891. doi: 10.1890/0012-9658(2006)87[880:IESFED]2.0.CO;2

Laine, A.-L. & Hanski, I. 2006. Large-scale spatial dynamics of specialist plant pathogen. Journal of Ecology. 92: 990-1000. doi: 10.1111/j.1365-2745.2005.01075.x

Laine, A.-L. 2005. Spatial scale of local adaptation in a plant-pathogen metapopulation. Journal of Evolutionary Biology 18:930-938. doi: 10.1111/j.1420-9101.2005.00933.x

Laine, A.-L. 2004. Resistance variation within and among host populations in a plant-pathogen metapopulation – implications for regional pathogen dynamics. Journal of Ecology 92: 990-1000. doi: 10.1111/j.0022-0477.2004.00925.x

Laine, A.-L. 2004. A powdery mildew infection on a shared host plant affects the dynamics of the Glanville fritillary butterfly populations. Oikos 107: 329-337. doi: 10.1111/j.0030-1299.2004.12990.x

Rautiainen, P., Laine, A.-L., Aspi, J., Aikio, S., Siira, J. & Hyvärinen, M. 2004. Seashore disturbance and management of the clonal Arctophila fulva: Modelling patch dynamics. Applied Vegetation Science 7:221-228. doi: 10.1111/j.1654-109X.2004.tb00613.x

Laine, A.-L. 2003. First report of Phomopsis subordinaria in a natural population of Plantago lanceolata L. in Southwest Finland. Plant Pathology 52: 422. doi: 10.1046/j.1365-3059.2003.00844.x

Burdon, J. J. & Laine, A.-L. 2019. Evolutionary dynamics of plant-pathogen interactions. Cambridge University Press. doi: 10.1017/9781108625517

Laine, A.-L. 2015. Metapopulation Ecology and Mutualisms. In Mutualism. Ed. Bronstein, J. L. Oxford University Press.

Kasanen, R. Wilson, P. & Laine, A.-L. 2013. Epidemiologia. Kirjassa: Sienten biologia Eds. S. Timonen & J. Valkonen. Gaudeamus.

Laine, A.-L. 2013. Evoluution suunta pirstoutuvissa elinympäristöissä. In Sata Tieteen Saavutusta. Eds. P. Havaste, T. Markkanen, & A. Tiitta. Heureka.

Rautiainen, P. & Laine, A.-L. 2005. Pohjansorsimon populaatiodynamiikka Liminganlahdella. In Suomen maatalousympäristön monimuotoisuus (eds M. K. J. Tiainen, I. Laurila & T. Toivonen). Edita, Helsinki.