Publications

2020

Numminen, E. & Laine, A.-L. 2020. The spread of a wild plant pathogen is driven by the road network. PLoS Computational Biology, Accepted.

Smith, A. L., Hodkinson, T. R., Villellas, J., Catford, J. A., Csergő, A. M., Blomberg, S. P., Crone, E., E., Ehrlén, J., Garcia, M. B., Laine, A.-L., Roach, D. B., Salguero-Gómez, R., Wardle, G. M., Childs, D. Z., Elderd, B. D., Finn, A., Munné-Bosch, S., Baudraz, M. E. A., Bódis, J., Brearley, F. Q., Bucharova, A., Caruso, C. M., Duncan, R. P., Dwyer, J. M., Gooden, B., Groenteman, R., Hamre, L. N., Helm, A., Kelly, R., Laanisto, L., Lonati, L., Moore, J. L., Morales, M., Olsen, S. L., Pärtel, M., Petry, W. K., Ramula, S., Rasmussen, P. U., Enri, S. R., Roeder, A., Roscher, C., Saastamoinen, M., Tack, A. J. M., Töpper, J. P., Vose, G. E., Wandrag, E. M., Wingler, A. and Buckley, Y. M. 2020.  Global gene flow releases invasive plants from environmental constraints on genetic diversity. Proceedings of The National Academy of Sciences, Accepted.

2019

Laine, A.-L., Barrès, B., Numminen, E. & Sirén, J. 2019. Variable opportunities for outcrossing result in hotspots of novel genetic variation in a pathogen metapopulation. eLife, 8:e47091. doi:10.7554/eLife.47091

Dallas, T., Laine, A.-L. & Ovaskainen, O. 2019. Detecting parasite associations within multispecies host and parasite communities. Proc R Soc B, 286:1912. doi:10.1098/rspb.2019.1109

Numminen, E., Vaumourin, E., Parratt, S., Poulin, L., & Laine, A.-L. 2019. Variation and correlations between sexual, asexual and natural enemy resistance life-history traits in a naturalplant pathogen population. BMC Evolutionary Biology, 19: 142. doi:10.1186/s12862-019-1468-2

Karvonen, A., Jokela, J. & Laine, A-L., 2019. The importance of sequence and timing of parasite coinfections. Trends in Parasitology, 35: 109-118. doi: 10.1016/j.pt.2018.11.007

Susi, H. S., Filloux, D., Frilander, M. J., Roumagnac, P. & Laine, A-L. 2019. Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. PeerJ. 7(24): 6140. doi: 10.7717/peerj.6140

2018
Penczykowski, R. M., Parratt, S. R., Barres, B., Sallinen, S. K. & Laine, A-L. 2018. Manipulating host resistance structure reveals impact of pathogen dispersal and environmental heterogeneity on epidemics. Ecology. 99: 2853-2863. doi: 10.1002/ecy.2526

Laine, A-L. & Mäkinen, H. 2018. Life-history correlations change under coinfection leading to higher pathogen load. Evolution Letters. 2: 126-133. doi: 10.1002/evl3.48

Parratt, S. R. & Laine, A-L. 2018. Pathogen dynamics under both bottom-up host resistance and top-down hyperparasite attack. Journal of Applied Ecology. 55: 2976-2985. doi: 10.1111/1365-2664.13185

Vaumourin, E. & Laine, A-L. 2018. Role of Temperature and Coinfection in Mediating Pathogen Life-History Traits. Frontiers in Plant Science. 9: 1670. doi: 10.3389/fpls.2018.01670

Höckerstedt, L. M., Siren, J. P. & Laine, A-L. 20018. Effect of spatial connectivity on host resistance in a highly fragmented natural pathosystem. Journal of Evolutionary Biology. 31: 844-852. doi: 10.1111/jeb.13268.

2017
Susi, H. & Laine, A.-L. 2017. Host resistance and pathogen aggressiveness are key determinants of coinfection in the wild. Evolution, 71:2110–2119. doi: 10.1111/evo.13290

Giraud, T., Koskella, B. & Laine, A.-L. 2017. Microbial local adaptation: insights from natural populations, genomics and experimental evolution. Molecular Ecology 26: 1703-1710. doi:10.1111/mec.14091

Susi H., Laine A.-L., Filloux D., Kraberger S., Farkas K., Bernardo P., Frilander M.J., Martin D.P., Varsani A., Roumagnac P. 2017. Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland. Arch Virol, 162:2041. doi:10.1007/s00705-017-3298-0

Soubeyrand, S. & Laine, A.-L. 2017. When group dispersal and Allee effect shape metapopulation dynamics. Annales Zoologici Fennici, 54:123-138. doi:10.5735/086.054.0112

Parratt, S. R., Barres, B., Penczykowski, R. M. & Laine, A.-L. 2017. Local adaptation at higher trophic levels: contrasting hyperparasite–pathogen infection dynamics in the field and laboratory. Molecular Ecology, 26: 1964–1979. doi:10.1111/mec.13928

Hiltunen, T. Virta, M. & Laine, A.-L. 2017. Antibiotic resistance in the wild: an eco-evolutionary perspective. Philosophical Transactions of the Royal Society. Biological Sciences. 372:1712 doi:10.1098/rstb.2016.0039

2016
Laine, A.-L. 2016. Disease resistance: Not so costly after all. Nature Plants 2:16121. doi:10.1038/nplants.2016.121

Croll, D. & Laine, A.-L. 2016. What the population genetic structures of host and pathogen tell us about disease evolution. New Phytologist, 212:537-539. doi:10.1111/nph.14203

Borer, E., Laine, A.-L. & Seabloom, E. 2016. A Multiscale Approach to Plant Disease Using the Metacommunity Concept. Annual Review of Phytopathology 54: 397-418. doi:10.1146/annurev-phyto-080615-095959

Laine, A.-L. 2016. Ilkka Hanski: Population ecologist who modeled how species cope with habitat loss. Nature 534:180 doi:10.1038/534180a

Parratt, S.R., Numminen, E. & Laine, A.-L. 2016. Infectious Disease Dynamics in Heterogeneous Landscapes. Annual Review of Ecology, Evolution and Systematics. 47:283–306. doi:10.1146/annurev-ecolsys-121415-032321

Parratt, S. R. and Laine, A-L 2016. The role of hyperparasitism in microbial pathogen ecology and evolution. The ISME Journal 10.1038/ismej.2015.247. doi: 10.1038/ismej.2015.247

Tollenaere, C., Susi, H. & Laine, A.-L. 2016. Evolutionary and epidemiological implications of multiple infections in plants. TRENDS in Plant Science, 21: 80-90 doi: 10.1016/j.tplants.2015.10.014

Penczykowski, R., Laine, A.-L. & Koskella, B. 2016. Understanding the ecology and evolution of host–parasite interactions across scales, Evolutionary Applications, 9: 37-52. doi: 10.1111/eva.12294

2015
Susi, H., Barrès, B., Vale, P. & Laine, A.-L. 2015. Coinfection alters population dynamics of infectious disease. Nature Communications, 6: 5975. doi: 10.1038/ncomms6975

Susi, H., Vale, P. & Laine, A.-L. 2015. Host genotype and coinfection modify the relationship of within and between host transmission. American Naturalist, 186: 252-263. doi: 10.1086/682069

Tack, A. J. M., Laine, A.-L., Burdon, J. J. Bissett, A. & Thrall, P. H. 2015. Belowground abiotic and biotic heterogeneity shapes aboveground infection outcomes and spatial divergence in a host-parasite interaction. New Phytologist, 207: 1159-1169. doi: 10.1111/nph.13408

Susi, H. & Laine, A.-L. 2015. The effectiveness and costs of pathogen resistance strategies in a perennial plant. Journal of Ecology, 103:303-315. doi: 10.1111/1365-2745.12373

Penczykowski, R., Walker, E., Soubeyrand, S. & Laine, A.-L. 2015. Linking winter conditions to large-scale disease dynamics in a wild plant-pathogen metapopulation. New Phytologist, 205:1142-1152. doi: 10.1111/nph.13145

2014
Tollenaere, C., Pernechele, B., Mäkinen, H., Parratt, S., Nemeth, M., Kovacs, G., Levente, K. Tack, A. & Laine, A.-L. 2014. A hyperparasite affects the population dynamics of a wild plant pathogen. Molecular Ecology, 23: 5877-5878. doi: 10.1111/mec.12908

Jousimo, J, Tack, AJM, Ovaskainen, O., Mononen, T., Susi, H., Tollenaere, C. & Laine, A.-L. 2014. Ecological and evolutionary effects of fragmentation on infectious disease dynamics. Science, 344: 1289-1293. doi: 10.1126/science.1253621

Laine, A.-L., Burdon et al. 2014. Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation. Proceedings of the Royal Society B, 281: 20140522. doi: 10.1098/rspb.2014.0522

Soubeyrand, S. Tollenaere, C., Haon-Lasportes, E. & Laine, A.-L. 2014. Regression-based ranking of pathogen strains with respect to their contribution to natural epidemics. PLoS ONE 9(1): e86591. doi: 10.1371/journal.pone.0086591

Tack, A. J. M. & Laine, A.-L. 2014. Ecological and evolutionary implications of spatial heterogeneity during the off-season for a wild plant pathogen. New Phytologist 202: 297-308. doi: 10.1111/nph.12646

Tack, A. J. M., Horns, F. & Laine, A.-L. 2014. The impact of spatial scale and habitat configuration on patterns of trait variation and local adaptation in a wild plant parasite. Evolution, 68:176-189. DOI: 10.1111/evo.12239

Tack, A. J. M. & Laine, A.-L. 2014. Spatial eco-evolutionary feedback in wild plant-pathogen interactions. European Journal of Plant Pathology, 138: 667-677. doi: 10.1007/s10658-013-0353-x

2013
Susi, H. & Laine, A.-L. 2013. Pathogen life-history correlations change in allopatry. Evolution 67: 3362-3370. doi: 10.1111/evo.12182

Laine, A.-L. & Barrès, B. 2013. Epidemiological and evolutionary consequences of virulence costs. Plant Pathology 62: S96-105. doi: 10.1111/ppa.12129

Tack, A. J. M., Hakala, J., Petäjä, T., Kulmala, M. & Laine, A.-L. 2013. Genotype and spatial structure shape pathogen dispersal and disease dynamics at small spatial scales. Ecology 95:703-714. doi: 10.1890/13-0518.1

Harrison, E. Laine, A.-L., Hietala, M. & Brockhurst, M. 2013. Rapidly fluctuating environments constrain co-evolutionary arms races by impeding selective sweeps. Proceeding of the Royal Society B, 280: 20130937. doi: 10.1098/rspb.2013.0937

Tollenaere, C. & Laine, A.-L. 2013. Investigating the production of sexual resting structures in a plant pathogen reveals unexpected self-fertility and genotype-by-environment effects. Journal of Evolutionary Biology, 26: 1716-1726. doi: 10.1111/jeb.12169

2012
Tollenaere, C. Susi, H., Nokso-Koivisto, J., Koskinen, P. Tack, A. J. M., Auvinen, P. Paulin, L., Frilander, M. J., Lehtonen, R. & Laine, A.-L. 2012. SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection. PLoS ONE 7: e52492. doi: 10.1371/journal.pone.0052492

Tack, A., Thrall, P. H. Barrett, L. G., Burdon, J. J. & Laine, A.-L. 2012. Variation in infectivity and aggressiveness in space and time in wild host-pathogen systems- causes and consequences. Journal of Evolutionary Biology 25:1918-1936. doi: 10.1111/j.1420-9101.2012.02588.x

Nemri, A., Barrett, L. G., Laine, A.-L., Burdon, J. J., & Thrall, P. H. 2012. Population Processes at Multiple Spatial Scales Maintain Diversity and Adaptation in the Linum marginale Melampsora lini Association. PLoS ONE 7: e41366. doi: 10.1371/journal.pone.0041366

Thrall, P. H., Laine, A.-L., Ravensdale, M. Nemri, A. Dodds, P. N. & Burdon, J. J. 2012. Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecology Letters, 15: 425-35. doi: 10.1111/j.1461-0248.2012.01749.x

2011
Laine, A.-L. 2011. Context dependent effects of induced resistance in mediating subsequent infections in a plant-pathogen interaction. Evolutionary Applications, 4: 696–707. doi: 10.1111/j.1752-4571.2011.00194.x

Laine, A.-L., Burdon, J. J., Dodds, P. N. & Thrall, P. H. 2011. Spatial variation in disease resistance: from molecules to metapopulations. Journal of Ecology, 99: 96-112. doi: 10.1111/j.1365-2745.2010.01738.x

Antonovics, J. Thrall, P.H., Burdon, J. J. & Laine, A.-L. 2011. Partial resistance in the Linum-Melampsora host-pathogen system: does partial resistance make the Red Queen run slower? Evolution, 65: 512-522. doi: 10.1111/j.1558-5646.2010.01146.x

North, A., Pennanen, J., Ovaskainen, O., & Laine, A.-L. 2011. Local adaptation in a changing world: the roles of gene flow, mutation, and sexual reproduction. Evolution, 65: 79-89. doi: 10.1111/j.1558-5646.2010.01107.x

Thrall, P. H., Laine, A.-L.,Broadhurst, L. M.,  Bagnall, D. J., Brockwell, J. 2011 .Symbiotic Effectiveness of Rhizobial Mutualists Varies in Interactions with Native Australian Legume Genera. PLoS ONE 6: e23545.doi: 10.1371/journal.pone.0023545

2010
Thompson, J. N., Laine, A.-L., & Thompson, J. F. 2010. Retention of mutualism in a geographically diverging interaction. Ecology Letters, 13:1368-1377. doi: 10.1111/j.1461-0248.2010.01529.x

2009
Georgescu, V., Kretzschemmar, A., Soubeyrand, S. & Laine, A.-L. 2009. Exploring spatial and multitype assemblages of species abundances. Biometrical Journal, 51: 979-995. doi: 10.1002/bimj.200900055

Laine, A.-L. 2009. Role of coevolution in generating biological diversity – spatially divergent selection trajectories. Journal of Experimental Botany 60: 2957-2970. doi: 10.1093/jxb/erp168

Soubeyrand, S., Laine, A.-L., Hanski, I. & Penttinen, A. 2009. Spatio-temporal structure of host-pathogen interactions in a metapopulation. American Naturalist, 174:308-320. doi: 10.1086/603624

2008
Laine, A.-L. 2008. Temperature-mediated patterns of local adaptation in a natural plant-pathogen metapopulation. Ecology Letters 11:327-337. doi: 10.1111/j.1461-0248.2007.01146.x

Van Nouhuys, S. & Laine, A.-L. 2008. Population dynamics and sex ratio of a parasitoid altered by fungal infected diet of host butterfly. Proceedings of the Royal Society B 275: 787-795. doi: 10.1098/rspb.2007.1588

Laine, A.-L. & Tellier, A. 2008. Heterogeneous selection promotes polymorphism maintenance in host-parasite interactions. Oikos 117:1281-1288. doi: 10.1111/j.0030-1299.2008.16563.x

2007
Laine, A.-L. 2007. Pathogen fitness components and genotypes differ in their sensitivity to nutrient and temperature variation in a wild plant-pathogen association. Journal of Evolutionary Biology 20: 2371-2378. doi: 10.1111/j.1420-9101.2007.01406.x

Roslin, T. Laine, A.-L. & Gripenberg, S. 2007. Spatial population structure in an obligate plant pathogen colonizing oak (Quercus robur). Functional Ecology 21:1168-1177. doi: 10.1111/j.1365-2435.2007.01315.x

Laine, A.-L. 2007. Detecting local adaptation in a natural plant-pathogen metapopulation – a laboratory vs. field transplant approach. Journal of Evolutionary Biology 20: 1665-1673. doi: 10.1111/j.1420-9101.2007.01359.x

2006
Laine, A.-L. 2006. Evolution of host resistance: looking for coevolutionary hotspots at small spatial scales. Proceedings of the Royal Society B 273:267-273. doi: 10.1098/rspb.2005.3303

Ovaskainen, O. & Laine, A.-L. 2006. Inferring evolutionary signals from ecological data in a plant-pathogen metapopulation. Ecology 87: 880-891. doi: 10.1890/0012-9658(2006)87[880:IESFED]2.0.CO;2

Laine, A.-L. & Hanski, I. 2006. Large-scale spatial dynamics of specialist plant pathogen. Journal of Ecology. 92: 990-1000. doi: 10.1111/j.1365-2745.2005.01075.x

2005
Laine, A.-L. 2005. Spatial scale of local adaptation in a plant-pathogen metapopulation. Journal of Evolutionary Biology 18:930-938. doi: 10.1111/j.1420-9101.2005.00933.x

2004
Laine, A.-L. 2004. Resistance variation within and among host populations in a plant-pathogen metapopulation – implications for regional pathogen dynamics. Journal of Ecology 92: 990-1000. doi: 10.1111/j.0022-0477.2004.00925.x

Laine, A.-L. 2004. A powdery mildew infection on a shared host plant affects the dynamics of the Glanville fritillary butterfly populations. Oikos 107: 329-337. doi: 10.1111/j.0030-1299.2004.12990.x

Rautiainen, P., Laine, A.-L., Aspi, J., Aikio, S., Siira, J. & Hyvärinen, M. 2004. Seashore disturbance and management of the clonal Arctophila fulva: Modelling patch dynamics. Applied Vegetation Science 7:221-228. doi: 10.1111/j.1654-109X.2004.tb00613.x

2003
Laine, A.-L. 2003. First report of Phomopsis subordinaria in a natural population of Plantago lanceolata L. in Southwest Finland. Plant Pathology 52: 422. doi: 10.1046/j.1365-3059.2003.00844.x

BOOKS
Burdon, J. J. & Laine, A.-L. 2019. Evolutionary dynamics of plant-pathogen interactions. Cambridge University Press. doi: 10.1017/9781108625517

BOOK SECTIONS
Laine, A.-L. 2015. Metapopulation Ecology and Mutualisms. In Mutualism. Ed. Bronstein, J. L. Oxford University Press.

Kasanen, R. Wilson, P. & Laine, A.-L. 2013. Epidemiologia. Kirjassa: Sienten biologia Eds. S. Timonen & J. Valkonen. Gaudeamus.

Laine, A.-L. 2013. Evoluution suunta pirstoutuvissa elinympäristöissä. In Sata Tieteen Saavutusta. Eds. P. Havaste, T. Markkanen, & A. Tiitta. Heureka.

Rautiainen, P. & Laine, A.-L. 2005. Pohjansorsimon populaatiodynamiikka Liminganlahdella. In Suomen maatalousympäristön monimuotoisuus (eds M. K. J. Tiainen, I. Laurila & T. Toivonen). Edita, Helsinki.